Secondary structure refers to regular, recurring arrangements in space of adjacent amino acid residues in a polypeptide chain. It is maintained by hydrogen bonds between amide hydrogens and carbonyl oxygens of the peptide backbone. The major secondary structures are α-helices and β-structures.
Watch our summarized 5 minute video on Alpha Helix and Beta-pleated sheet
Alpha Helix |
Beta-pleated sheet (beta sheet) |
In
alpha helix; amino acid chain is in a right-handed spiral conformation or
clockwise |
In
beta sheets; amino acid chain is in an almost fully extended conformation,
linear or ‘sheet like’ |
Forms
a rod like structure |
Sheet
like structure |
It is
held together by hydrogen bonds between the C=O (carbonyl Oxygen) of residue 1
and the NH (amide H) of residue 4. |
It is
held by hydrogen bond between the N−H groups in the backbone of one strand and
C=O groups in the backbone of the adjacent strands. |
Intramolecular hydrogen bonding within the
polypeptide chain |
intermolecular hydrogen bonding, between two
separate chains or beta strands. |
Alpha
helix: Only one type |
Two
types: Parallel beta sheets: The
chains or beta strands run parallel
(all N terminals on one end) anti-parallel beta sheets: Chains runs in
opposite direction (N terminal and C terminal ends alternate) |
The R
groups of the amino acids stick outward from the α helix, where they are free
to interact |
R groups extend above and below the
plane of the sheet |
It can
be a single chain |
Cannot
exist as a single beta strand |
Dimensions An
average alpha-helix is 10 residues long (15 Â0 in length), generally
alpha-helices can range between 4 to 40 residues in length. It
completes one turn every 3.6 residues |
A
β-strand is a polypeptide chain typically 3 to 10 amino acids long with
backbone in an extended conformation. |
|
|
Most
preferred residues: as Ala, Glu, Leu and Met Least preferred residues: Pro
and Gly Proline,
which cannot fit into a helix, and introduces a kink often called as helix
terminator |
Amino
acids such as tryptophan, tyrosine, and phenylalanine, which have large ring
structures in their R groups, are often found in β pleated sheets, as this
structure provides plenty of space for the side chains |
Many proteins contain both α helices and β
pleated sheets |
|
Occurrence
in Keratin, hemoglobin, myoglobin has
high proportion of alpha helix structure |
Silk fibres or fibroin |
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